FROM mambaorg/micromamba:2.0.5
RUN micromamba install -y -n base -c conda-forge -c bioconda "bioconda::gargammel=1.1.4" python=3.12 2>&1 | tail -3 \
 && micromamba clean -afy
COPY run_gargammel.py /opt/run_gargammel.py
ENV PATH=/opt/conda/bin:$PATH LANG=C.UTF-8 HOME=/tmp
USER 65534:65534
WORKDIR /work/out
ENTRYPOINT []
